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Draft White Paper on Knowledge Organization Systems (KOS). Contains survey of community, survey of current biodiversity KOS  landscape, and recommendations to GBIF for KOS adoption.

KOS includes controlled vocabularies, thesauri, gazetteers, ontologies and other knowledge management resources. 

Thank you for this opportunity to comment.

I want to congratulate the team on a well written document. I enjoyed reading it. I hope some of my comments may be of use to you. I participate from the Information Systems / Computer Science side.

Regarding the 'Needs for KOS' I may just add that the fact that people still do not use OWL could probably be tied to the learning curve involved and not due to 'unpopularity' or 'not being of use'. To really develop a useful ontology in OWL, one needs to be quite versed in the logical foundations. Properly using OWL/ontology technologies could be very advantageous in this endeavour, and would probably open up opportunies not envisioned at the moment.

With regards to the OBO Foundry and associated GO ontology family, it might be useful to also note the approach and 'ontology architecture' adopted. Ontology integration is still an open research issue and if one develops 'ontologies' that overlap, it creates problems. This is adressed by the OBO Foundry / GO in a practical way by clearly separating domains and indicating the links. This article 'Toward a Global Biodiversity
Observing System' at http://www.earthobservations.com/documents/committees/uic/200809_8thUIC/07b-Health0Montira-Pongsiri-BON-Article-in-
Science.pdf seems to be hinting at this. Also see http://www.geneontology.org/GO.doc.shtml

With regards to the topic of 'shared vocabularies', one might also look at SnoMed CT - http://www.ihtsdo.org/snomed-ct/. SNOMED CT (Systematized Nomenclature of Medicine-Clinical Terms) is a multilingual clinical healthcare ontolog used primarily as a shared vocabulary of clinical terms. It uses a lightweight Description Logic as representation language.

It might be useful to consider some of the foundational ontologies, such as DOLCE http://www.loa-cnr.it/DOLCE.html, BFO - http://www.ifomis.org/bfo or SUMO - http://www.ontologyportal.org/. This is especially important if 'interoperability' and 'shared vocabularies' are goals.

Of course, other than NeOn (http://www.neon-project.org/nw/Welcome_to_the_NeOn_Project), there are several large ontology (FP) projects. See for instance WonderWeb at http://www.loa-cnr.it/index.html and Tones (Thinking ONtologiES) at http://www.ist-world.org/ProjectDetails.aspx?ProjectId=588d2038950f412ebf16b508a993d5e3 and http://www.tonesproject.org/

best regards

Aurona Gerber

 

 

Aurona Gerber 546 days ago